Leyao Wang; Yijie Ding*; Junhai Xu; Wenhuan Lu; Jijun Tang; Fei Guo*, Identification of DNA N4-Methylcytosine Sites via Fuzzy Model on Self Representation, Applied Soft Computing: 2022, DOI: 10.1016/j.asoc.2022.108840.
Chengwei Ai; Hongpeng Yang; Yijie Ding*; Jijun Tang; Fei Guo*, A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases, Neurocomputing: 2022, DOI: 10.1016/j.neucom.2022.04.068.
Yijie Ding; Prayag Tiwari; Quan Zou; Fei Guo; Hari Mohan Pandey, C-loss based Higher-order Fuzzy Inference Systems for Identifying DNA N4-methylcytosine Sites, IEEE Transactions on Fuzzy Systems: 2022, DOI: 10.1109/TFUZZ.2022.3159103.
Mengwei Sun; Yuqing Qian; Yijie Ding*; Jijun Tang; Quan Zou*, Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model, 2021 IEEE International Conference on Bioinformatics and Biomedicine, (IEEE BIBM): 2022, DOI: 10.1109/BIBM52615.2021.9669833. (CCF B conference)
Yijie Ding; Jijun Tang; Fei Guo*; Quan Zou*, Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization, Briefings in Bioinformatics: 2022, DOI: 10.1093/bib/bbab582.
Yijie Ding; Wenying He; Jijun Tang; Quan Zou*; Fei Guo*, Laplacian Regularized Sparse Representation based Classifier for Identifying DNA N4-methylcytosine Sites via L2,1/2-matrix Norm, IEEE/ACM Transactions on Computational Biology and Bioinformatics: 2021, DOI: 10.1109/TCBB.2021.3133309.
Hongpeng Yang; Yijie Ding*; Jijun Tang; Fei Guo*, Inferring human microbe-drug associations via multiple kernel fusion on graph neural network, Knowledge-Based Systems: 2021, DOI: 10.1016/j.knosys.2021.107888.
Chao Yang; Yijie Ding*; Qiaozhen Meng; Jijun Tang; Fei Guo*,Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information, Neural Computing and Applications: 2021, DOI: 10.1007/s00521-020-05573-4.
Haohao Zhou; Hao Wang; Jijun Tang; Yijie Ding*; Fei Guo*, Identify ncRNA subcellular localization via graph regularized k-local hyperplane distance nearest neighbor model on multi-kernel learning, IEEE/ACM Transactions on Computational Biology and Bioinformatics: 2021, DOI: 10.1109/TCBB.2021.3107621.
Hongpeng Yang; Yijie Ding*; Jijun Tang; Fei Guo*, Identifying potential association on gene-disease network via dual hypergraph regularized least squares, BMC Genomics: 2021, DOI: 10.1186/s12864-021-07864-z.
Yijie Ding; Chao Yang; Jijun Tang; Fei Guo*, Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model, Applied Intelligence: 2021, DOI: 10.1007/s10489-021-02737-0.
Hongpeng Yang; Yijie Ding*; Jijun Tang; Fei Guo*, Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares, Applied Soft Computing: 2021, 112(2):107811, DOI: 10.1016/j.asoc.2021.107811.
Yijie Ding; Jijun Tang; Fei Guo*, Identification of Drug-Target Interactions via Multi-view Graph Regularized Link Propagation Model, Neurocomputing: 2021, DOI: 10.1016/j.neucom.2021.05.100.
Yuqing Qian; Limin Jiang; Yijie Ding*; Jijun Tang; Fei Guo*, A sequence-based multiple kernel model for identifying DNA-binding proteins, BMC Bioinformatics: 2021, DOI: 10.1186/s12859-020-03875-x.
Yuqing Qian; Hao Meng; Weizhong Lu; Zhijun Liao*; Yijie Ding*; Hongjie Wu*. Identification of DNA-binding proteins via Hypergraph based Laplacian Support Vector Machine, Current Bioinformatics: 2021, DOI: 10.2174/1574893616666210806091922.
Yan Zheng; Hao Wang; Yijie Ding*; Fei Guo*,CEPZ: A Novel Predictor for Identification of DNase I Hypersensitive Sites, IEEE/ACM Transactions on Computational Biology and Bioinformatics:2021, DOI: 10.1109/TCBB.2021.
Yinuo Lyu; Zhen Zhang; Jiawei Li; Wenying He; Yijie Ding*; Fei Guo*,iEnhancer-KL: a novel two-layer predictor for identifying enhancer by position specific of nucleotide composition, IEEE/ACM Transactions on Computational Biology and Bioinformatics: 2021, DOI:10.1109/TCBB.2021.
Hao Wang; Jijun Tang; Yijie Ding*; Fei Guo*, Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment, Briefings in Bioinformatics, 2021, DOI: 10.1093/bib/bbaa409.
Yijie Ding; Jijun Tang; Fei Guo*. Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation, Applied Soft Computing 2020, doi: 10.1016/j.asoc.2020.106596.
Yijie Ding, Jijun Tang, Fei Guo*, Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion, Knowledge-Based Systems, 2020,204,106254.
Hao Wang; Yijie Ding*; Jijun Tang; Fei Guo*, Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion, Neurocomputing, 2020,383: 257-269.
Yijie Ding; Limin Jiang; Jijun Tang; Fei Guo*, Identification of human microRNA-disease association via hypergraph embedded bipartite local model, Computational Biology and Chemistry, 2020, DOI: 10.1016/j.compbiolchem.2020.107369.
Yi Zou; Hongjie Wu; Xiaoyi Guo; Li Peng; Yijie Ding*; Jijun Tang; Fei Guo*, MK-FSVM-SVDD: A Multiple Kernel-based Fuzzy SVM Model for Predicting DNA-binding Proteins via Support Vector Data Description, Current Bioinformatics, 2020, DOI: 10.2174/1574893615999200607173829.
Yijie Ding; Jijun Tang; Fei Guo*. Identification of drug-target interactions via fuzzy bipartite local model. Neural Computing and Applications: 2019, DOI: 10.1007/s00521-019-04569-z.
Yijie Ding; Jijun Tang; Fei Guo*. Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation. IEEE/ACM Transactions on Computational Biology and Bioinformatics: 2019, DOI: 10.1109/TCBB.2019.
Yijie Ding; Jijun Tang; Fei Guo*. The Computational Models of Drug-target Interaction Prediction. Protein and Peptide Letters: 2019, DOI: 10.2174/0929866526666190410124110.
Yijie Ding; Jijun Tang; Fei Guo*. Identification of Drug-side Effect Association via Semi-supervised Model and Multiple Kernel Learning. IEEE Journal of Biomedical and Health Informatics: 2019, 23(6), 2619-2632.
Yijie Ding; Jijun Tang; Fei Guo*. Identification of drug-side effect association via multiple information integration with centered kernel alignment. Neurocomputing: 2019 ,325 ,211-224.
Yijie Ding; Jijun Tang; Fei Guo*. Identification of drug-target interactions via multiple information integration. Information Sciences: 2017 ,418 ,546-560.
Yijie Ding; Jijun Tang; Fei Guo*. Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. Journal of chemical information and modeling: 2017 ,57 (12) ,3149-3161.
Yijie Ding; Jijun Tang; Fei Guo*. Predicting protein-protein interactions via multivariate mutual information of protein sequences. BMC bioinformatics: 2016 ,17 (1) ,398.
Full publications: Researchgate
Last Update: 2022/4/21