FMAlign is a MSA tool based on FM-index for DAN/RNA sequence alignment.
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- source code
- Usage: ./FMAlign --in *.fasta --thread [-t] --subfile [-s]
If you want to run FMAlign, you should first type "make".
--in input fasta file , and --thread set the number of CPU threads, --subfile set the number of subsequences.
Dataset
- Download (zipped file): data
Related Tools
SP is a jar file, which can be used to compute the average value of sum-of-pair score for the
alignment result(You can download SP.jar from the homepage of HAlign).