环形RNA的识别与功能预测

成员

    (电子科技大学)

王春宇 副教授 (哈尔滨工业大学)

曾湘祥   (湖南大学)

    (厦门大学)

牛梦婷 博士生 (电子科技大学)

陈瑶佳 博士生 (电子科技大学)

论文

1.         Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou*. A comprehensive overview and evaluation of circular RNA detection tools. PLoS Computational Biology. 2017,13(6): e1005420. ESI高引论文HIGHLY CITED PAPER

2.        Xiangxiang Zeng, Wei Lin, Maozu Guo, Quan Zou*. Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang. PLoS Computational Biology. 2019, 15(4): e1006916

3.        Xiangxiang Zeng*, Yue Zhong, Wei Lin, Quan Zou*. Predicting Disease-associated Circular RNAs Using Deep Forests Combined with Positive-Unlabeled Learning Methods. Briefings in Bioinformatics. 2020, 21(4): 1425-1436.

4.        Mengting Niu, Jun Zhang, Yanjuan Li, Cankun Wang, Zhaoqian Liu, Hui Ding, Quan Zou*, Qin Ma*. CirRNAPL: A web server for the identification of circRNA based on extreme learning machine. Computational and Structural Biotechnology Journal. 2020, 18: 834-842. (web server)

5.         Jiao Shihu, Wu Song, Huang Shan, Liu Mingyang, Gao Bo. Advances in the Identification of Circular RNAs and Research Into circRNAs in Human Diseases. Frontiers in Genetics. 2021;12: 665233.

6.        Mengting Niu, Ying Ju, Chen Lin*, Quan Zou*. Characterizing Viral circRNAs and their Application in Identifying CircRNAs in Viruses. Briefings in Bioinformatics. 2022, 23(1): bbab404. (web server)

7.         Mengting Niu, Quan Zou, Chen Lin*. CRBPDL: identification of circRNA-RBP interaction sites using an ensemble neural network approach. PLoS Computational Biology. 2022, 18(1): e1009798. (codes)

8.        Mengting Niu, Quan Zou*, Chunyu Wang*. GMNN2CD: Identification of circRNA–disease associations based on variational inference and graph Markov neural networks. Bioinformatics. 2022, 38(8): 2246-2253. (codes and data)

9.        Yaojia Chen, Yanpeng Wang, Yijie Ding, Xi Su, Chunyu Wang. RGCNCDA: Relational Graph Convolutional Network improve circRNA-disease associations prediction by incorporating microRNAs. Computers in Biology and Medicine.2022, 143: 105322

 

专利

Ø  基于MapReduce并行的circRNA识别方法(专利号:ZL202010429009.X,发明人:邹权、牛梦婷)