空间转录组数据分析

成员

  • 邹    权   教    授 （电子科技大学）
  • 张子龙   副教授 （海南大学）
  • 刘    怡   博士生 （电子科技大学）
  • 孙一迪   博士生 （海南大学）
  • 高鹏飞   博士生 （海南师范大学）
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    项目

  • 国家自然科学基金青年基金项目：面向空间转录组数据的细胞类型注释方法的研究（62502054）
  • 国家自然科学基金地区基金项目：单细胞转录组与空间转录组数据整合方法研究（62261018）
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    论文

    1. Zilong Zhang, Feifei Cui, Wei Su, Lijun Dou, Anqi Xu, Chen Cao, Quan Zou*. webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration. Bioinformatics. 2022, 38(13):3488-3489.谷歌学术引用次
    2. Chaorui Yan, Yanxu Zhu, Miao Chen, Kainan Yang, Feifei Cui*, Quan Zou*, Zilong Zhang*. Integration tools for scRNA-seq data and spatial transcriptomics sequencing data. Briefings in Functional Genomics. 2024, 23(4): 295-302.谷歌学术引用次
    3. Yidi Sun, Lingling Kong, Jiayi Huang, Hongyan Deng, Xinling Bian, Xingfeng Li, Feifei Cui, Lijun Dou, Chen Cao, Quan Zou*, Zilong Zhang*. A comprehensive survey of dimensionality reduction and clustering methods for single-cell and spatial transcriptomics data. Briefings in Functional Genomics. 2024, 23(6): 733-744. 谷歌学术引用次
    4. Runqing Wang, Qiguo Dai*, Xiaodong Duan, Quan Zou*. stHGC: A Self-Supervised Graph Representation Learning for Spatial Domain Recognition with Hybrid Graph and Spatial Regularization. Briefings in Bioinformatics. 2025, 26(1): bbae666 谷歌学术引用次
    5. Lijun Cai, Yuling He, Xiangzheng Fu, Linlin Zhuo, Quan Zou, Xiaojun Yao. AEGNN-M: A 3D Graph-Spatial Co-Representation Model for Molecular Property Prediction. IEEE Journal of Biomedical and Health Informatics. 2025, 29(3): 1726-1734
    6. Hao Duan, Qingchen Zhang, Feifei Cui*, Quan Zou*, Zilong Zhang*. MVST: Identifying spatial domains of spatial transcriptomes from multiple views using multi-view graph convolutional networks. PLOS Computational Biology. 2024, 20(9): e1012409
    7. Ziyi Wang, Aoyun Geng, Hao Duan, Feifei Cui, Quan Zou, Zilong Zhang*. A comprehensive review of approaches for spatial domain recognition of spatial transcriptomes. Briefings in Functional Genomics. 2024, 23(6): 702-712
    8. Chao Yang, Xiuhao Fu, Zhenjie Luo, Leyi Wei, Jingbing Li, Feifei Cui, Quan Zou, Qingchen Zhang, Zilong Zhang*. GCNLA: Inferring Cell-cell Interactions from Spatial Transcriptomics with Long Short-term Memory and Graph Convolutional Networks. IEEE Journal of Biomedical and Health Informatics. 2025, 29(11): 8560-8571
    9. Chunyan Cui, Feifei Cui, Quan Zou, Zilong Zhang*, Linpei Jia*. Progress and applications of single-cell RNA sequencing and spatial transcriptome technology in acute kidney injury research. Molecular Therapy: Nucleic Acid. 2025, 36(3): 102583
    10. Yuhong Zha, Shaoqing Feng, Peng Gao, Quan Zou, Xiaoke Ma*. Enhancing and accelerating cell type deconvolution of large-scale spatial transcriptomics slices with dual network model. Bioinformatics. 2025, 41(8): btaf419
    11. Yajie Meng, Yongkang Wang, Cheng Guo, Xianfang Tang, Zilong Zhang, Feifei Cui, Xiangzheng Fu, Quan Zou, Xu Lu*, Junlin Xu*. ST-GCP: A Graph Convolutional Network Model with Contrastive Consistency and Permutation for Spatial Transcriptomics. Briefings in Bioinformatics. 2025, 26(6): bbaf643
    12. Yi Liu, Yixiao Zhai, Pinglu Zhang, Quan Zou, Ximei Luo*. MMSpa is a deep learning-based tool that enhances the identification of spatial domains in spatial transcriptomics studies. PLoS Biology. 2026, 24(1): e3003580
    13. Dachen Liu, Hua Shi*, Yihang Lin, Zhen Chen, Quan Zou. TOGAR: Token-gated generative refinement for high-fidelity spatial transcriptomics and robust spatial domain clustering. Genomics. 2026, 118: 111179

      14. 最后修改时间：2026.1.6
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