Research Interests

  • Using deep learning methods to solve bioinformatics problems

    • Genome analysis

    • Association analysis

    • Interaction prediction

    • Biological sequence analysis

Awards

  • 2019, Guangxi Autonomous Region People's Government Scholarship

  • 2021, Outstanding University Graduates of Guangxi Autonomous Region

  • 2022, National Scholarship for Graduate Students

Publications

  • CRBPSA: CircRNA-RBP interaction sites identification using sequence structural attention model

    Chao Cao, Chunyu Wang, Qi Dai, Quan Zou, Tao Wang
    BMC Biology (1区 Top) 2024
    Cao, C., Wang, C., Dai, Q. et al. CRBPSA: CircRNA-RBP interaction sites identification using sequence structural attention model. BMC Biol 22, 260 (2024). https://doi.org/10.1186/s12915-024-02055-0


  • CircSI-SSL: circRNA-binding site identification based on self-supervised learning

    Chao Cao, Chunyu Wang, Shuhong Yang, Quan Zou
    Bioinformatics (CCF-B) 2024
    Chao Cao, Chunyu Wang, Shuhong Yang, Quan Zou, CircSI-SSL: circRNA-binding site identification based on self-supervised learning, Bioinformatics, Volume 40, Issue 1, January 2024, btae004, https://doi.org/10.1093/bioinformatics/btae004


  • CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization

    Chao Cao, Shuhong Yang, Mengli Li, Chungui Li
    BMC Bioinformatics (CCF-C) 2023
    Cao, C., Yang, S., Li, M. et al. CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization. BMC Bioinformatics 24, 220 (2023). https://doi.org/10.1186/s12859-023-05352-7


  • Deep Embedding Clustering Based on Residual Autoencoder

    Mengli Li, Chao Cao, Chungui Li, Shuhong Yang
    Neural Processing Letters (CCF-C) 2024
    Li, M., Cao, C., Li, C. et al. Deep Embedding Clustering Based on Residual Autoencoder. Neural Process Lett 56, 127 (2024). https://doi.org/10.1007/s11063-024-11586-0


  • 基于局部结构保持的高维数据半监督深度嵌入聚类算法

    曹超, 李梦利, 阳树洪, 李春贵
    广西科学 (北大核心) 2022
    曹超, 李梦利, 阳树洪, 等. 基于局部结构保持的高维数据半监督深度嵌入聚类算法. 广西科学, 2022, 29(5): 922-929. DOI: 10.13656/j.cnki.gxkx.20221116.013