Research Interests

  • Using deep learning methods to solve bioinformatics problems

    • Genome analysis

    • Association analysis

    • Interaction prediction

    • Biological sequence analysis

Awards

  • 2019, Guangxi Autonomous Region People's Government Scholarship

  • 2021, Outstanding University Graduates of Guangxi Autonomous Region

  • 2022, National Scholarship for Graduate Students

Publications

  • CircSI-SSL: circRNA-binding site identification based on self-supervised learning

    Chao Cao, Chunyu Wang, Shuhong Yang, Quan Zou
    Bioinformatics (CCF-B) 2024
    Chao Cao, Chunyu Wang, Shuhong Yang, Quan Zou, CircSI-SSL: circRNA-binding site identification based on self-supervised learning, Bioinformatics, Volume 40, Issue 1, January 2024, btae004, https://doi.org/10.1093/bioinformatics/btae004


  • CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization

    Chao Cao, Shuhong Yang, Mengli Li, Chungui Li
    BMC Bioinformatics (CCF-C) 2023
    Cao, C., Yang, S., Li, M. et al. CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization. BMC Bioinformatics 24, 220 (2023). https://doi.org/10.1186/s12859-023-05352-7


  • Deep Embedding Clustering Based on Residual Autoencoder

    Mengli Li, Chao Cao, Chungui Li, Shuhong Yang
    Neural Processing Letters (CCF-C) 2024
    Li, M., Cao, C., Li, C. et al. Deep Embedding Clustering Based on Residual Autoencoder. Neural Process Lett 56, 127 (2024). https://doi.org/10.1007/s11063-024-11586-0


  • 基于局部结构保持的高维数据半监督深度嵌入聚类算法

    曹超, 李梦利, 阳树洪, 李春贵
    广西科学 (北大核心) 2022
    曹超, 李梦利, 阳树洪, 等. 基于局部结构保持的高维数据半监督深度嵌入聚类算法. 广西科学, 2022, 29(5): 922-929. DOI: 10.13656/j.cnki.gxkx.20221116.013