English Version


  • 邹权，电子科技大学基础与前沿研究院教授，博士研究生导师，IEEE高级会员，ACM高级会员，CCF杰出会员。
  • 招收博士后（35岁以下）、访问学生（需导师同意）以及2020级硕士研究生。感兴趣的同学欢迎邮件联系，署名邮件必回复
  • 我对研究生的要求
  • 本课题组研究生毕业论文要求
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    研究方向：

  • 利用并行/高性能计算解决生物信息学问题
    • 多序列比对和进化树构建 (HAlign)
    • motif和network motif
    • 生物序列聚类与去冗余
  • 利用机器学习方法解决生物信息学问题
  • 生物信息学应用问题
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    主持项目：


    国家自然科学基金优秀青年基金    生物信息处理与分析
    国家自然科学基金面上项目    利用多序列比对指导16s rRNA的OTU聚类
    国家自然科学基金面上项目    基于MapReduce的非编码RNA“从头预测”识别方法研究 (已结题)
    国家自然科学基金青年基金    基于投票机制的非编码RNA“从头预测”识别方法研究 (已结题)
    福建省自然科学基金面上项目    转录组数据中的microRNA和SNP挖掘方法研究 (已结题)

    学术兼职：

  • Editor-in-Chief of Current Bioinformatics
  • Associate Editor of IEEE Access
  • Editorial Board Member of Computers in Biology and Medicine, Computational Biology and Chemistry, Scientific Report, Interdisciplinary Sciences--Computational Life Sciences, Genes
  • Guest Associate Editor of PLoS Computational Biology
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    出版著作：


  • Jon Galloway, Phil Haack, Brad Wilson等著. 孙远帅, 邹权译. ASP.NET MVC 4高级编程（第4版）.清华大学出版社. 2013.8 ISBN：9787302330035
  • 系统生物学的网络分析方法. 邹权, 陈启安, 曾湘祥, 刘向荣 编著. 西安电子科技大学出版社. 2015.6. ISBN：9787560635385

  • Quan Zou (Ed.) Special Protein Molecules Computational Identification. MDPI. St. Alban-Anlage 66. Basel, Switzerland. ISBN: 9783038970439 (Pbk) 9783038970446 (PDF) doi:10.3390/books978-3-03897-044-6
  • Xiangxiang Zeng, Alfonso Rodríguez-Patón and Quan Zou (Eds.) Molecular Computing and Bioinformatics. MDPI. St. Alban-Anlage 66. Basel, Switzerland. ISBN 978-3-03921-195-1 (Pbk) ISBN 978-3-03921-196-8 (PDF) doi:10.3390/books978-3-03921-196-8

    •  特约报告：
  • 生物信息学中的不确定性和分类问题. CRSSC-CWI-CGrC2014青年学者论坛. 2014.8.7. 昆明. PPT
  • Machine learning and computational problems in genome-wide association study. CAAI机器学习专委会首届青年学者交流会. 2014.8.15. 南昌 PPT
  • Reconstructing phylogenetic trees for ultra-large unaligned DNA sequences via with Hadoop. The 9th International Conference on Systems Biology (ISB 2015). 2015.8.21. 洛阳 PPT
  • Computational prediction of miRNA and miRNA-disease relationship. 2015 Asian Conference on Membrane Computing (ACMC2015). 2015.11.14. 合肥 PPT
  • DNA多序列比对中的算法技术和并行方法. 2016大数据与精准生物医学信息学研讨会. 2016.3.26. 上海. PPT
  • LibD3C: an imbalanced ensemble classifier without any parameter tuning. 第二届生物信息学与药物设计研讨会. 2016.7.30. 重庆 PPT
  • Hierarchical learning and high dimensionality problems in bioinformatics. 中国人工智能学会机器学习专委会青年学者论坛. 2017.9.8. 西安 PPT
  • 基因序列的比对、挖掘和功能分析. 第二届中国计算机学会生物信息学会议. 2017.10.14. 长沙. PPT

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    代表论文：(*Corresponding author)

    1. A comprehensive overview and evaluation of circular RNA detection tools. PLoS Computational Biology. 2017,13(6): e1005420 (SCI, IF2017=3.955, PMID: 28594838) (data and codes)(BibTeX, EndNote)
    2. Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang. PLoS Computational Biology. 2019, 15(4): e1006916 (SCI, IF2017=3.955, PMID: 31022173)
    3. Gene2vec: Gene Subsequence Embedding for Prediction of Mammalian N6‐Methyladenosine Sites from mRNA. RNA. 2019, 25(2): 205-218 (SCI, IF2017=4.490, PMID: 30425123) (web server)(BibTeX, EndNote)

    4. HAlign: Fast Multiple Similar DNA/RNA Sequence Alignment Based on the Centre Star Strategy. Bioinformatics. 2015,31(15): 2475-2481. (SCI, IF2017=5.481, PMID: 25812743) (Software)(该软件被OMICTOOLS推荐)(BibTeX, EndNote)
    5. PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning. Bioinformatics. 2019, 35(21):4272-4280. (SCI, IF2017=5.481, PMID:30994882) (web server)
    6. Tumor Origin Detection with Tissue-Specific miRNA and DNA methylation Markers. Bioinformatics. 2018, 34(3): 398-406. (SCI, IF2017=5.481, PMID:29028927) (web server) High impact research from Bioinformatics (BibTeX, EndNote)
    7. Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species. Bioinformatics. 2019, 35(8): 1326-1333. (SCI, IF2017=5.481, PMID: 30239627)(web server)
    8. O-GlcNAcPRED-II: an integrated classification algorithm for identifying O-GlcNAcylation sites based on fuzzy undersampling and a K-means PCA oversampling technique. Bioinformatics. 2018, 34(12): 2029-2036. (SCI, IF2017=5.481, PMID:29420699)(web server)(该软件被OMICTOOLS推荐)(BibTeX, EndNote)
    9. Prediction of potential disease-associated microRNAs using structural perturbation method. Bioinformatics. 2018, 34(14): 2425-2432.(SCI, IF2017=5.481, PMID:29490018)(codes)(BibTeX, EndNote)
    10. 4mCPred: Machine Learning Methods for DNA N4-methylcytosine sites Prediction. Bioinformatics. 2019, 35(4): 593-601 (SCI, IF2017=5.481, PMID: 30052767)(web server)(该软件被OMICTOOLS推荐)
    11. StackCPPred: A Stacking and Pairwise Energy Content based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency. Bioinformatics. Doi: 10.1093/bioinformatics/btaa131. (code)
    12. Iterative feature representations improve N4-methylcytosine site prediction. Bioinformatics. 2019, 35(23): 4930-4937. (SCI, IF2017=5.481, PMID:31099381)(web server)
    13. PaGeFinder: Quantitative Identification of Spatiotemporal Pattern Genes. Bioinformatics. 2012, 28(11):1544-1545. (SCI, IF2017=5.481, PMID:22492640)(Web Server)(BibTeX, EndNote)

    14. Sequence clustering in bioinformatics: an empirical study. Briefings in Bioinformatics. 2020,21(1): 1-10 (SCI, IF2017=6.302, PMID: 30239587)(data)
    15. Survey of MapReduce Frame Operation in Bioinformatics. Briefings in Bioinformatics. 2014,15(4): 637-647. (SCI, IF2017=6.302, PMID: 23396756)(BibTeX, EndNote)
    16. Integrative approaches for predicting microRNA function and prioritizing disease-related microRNA using biological interaction networks. Briefings in Bioinformatics. 2016,17(2):193-203.(SCI, IF2017=6.302, PMID:26059461)(BibTeX, EndNote)
    17. Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms. Briefings in Bioinformatics. 2020,21(1): 106-119. (SCI, IF2017=6.302, PMID:30383239)(web server)
    18. HITS-PR-HHblits: Protein remote homology detection by combining pagerank and hyperlink-induced topic search. Briefings in Bioinformatics. 2020,21(1): 298-308.(SCI, IF2017=6.302, PMID:30403770)(web server)
    19. Computational methods for identifying the critical nodes in biological networks. Briefings in Bioinformatics. Doi: 10.1093/bib/bbz011.(SCI, IF2017=6.302, PMID:30753282)
    20. Transcription factors-DNA interactions in rice: identification and verification. Briefings in Bioinformatics. doi: 10.1093/bib/bbz045(SCI, IF2017=6.302, PMID:31091308)
    21. Clustering and Classification Methods for Single-cell RNA-sequencing Data. Briefings in Bioinformatics. doi: 10.1093/bib/bbz062(SCI, IF2017=6.302, PMID:31271412)
    22. Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings in Bioinformatics. doi: 10.1093/bib/bbz106. (web server)
    23. Predicting Disease-associated Circular RNAs Using Deep Forests Combined with Positive-Unlabeled Learning Methods. Briefings in Bioinformatics. doi:10.1093/bib/bbz080.
    24. EP3: An ensemble predictor that accurately identifies type III secreted effectors. Briefings in Bioinformatics. Doi: 10.1093/bib/bbaa008. (web site)

    25. Fast prediction of protein methylation sites using a sequence-based feature selection technique. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2019,16(4):1264-1273. (SCI, IF2015=1.609, PMID:28222000)(web server)(该软件被OMICTOOLS推荐)
    26. Prediction and validation of disease genes using HeteSim Scores. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017, 14(3):687-695. (SCI, IF2017=2.428, PMID:26890920)(Codes and Data)(BibTeX, EndNote)
    27. Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017, 14(4): 905-915.(Web Server)(SCI, IF2015=1.609, PMID:27076459)(BibTeX, EndNote)
    28. Improved and Promising Identification of Human MicroRNAs by Incorporating a High-quality Negative Set. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2014, 11(1):192-201 (SCI, IF2017=2.428, PMID: 24216114)(Software)(BibTeX, EndNote)
    29. Protein Complexes Identification with Family-Wise Error Rate Control. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Doi: 10.1109/TCBB.2019.2912602. (SCI, IF2017=2.428, PMID:31027047)
    30. Advanced machine learning techniques for bioinformatics. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2019,16(4):1182-1183(SCI, IF2017=2.428)
    31. PhosPred-RF: a novel sequence-based predictor for phosphorylation sites using sequential information only. IEEE Transactions on NanoBioscience. 2017, 16(4): 240-247. (SCI, IF2017=2.158, PMID:28166503) (web server)(BibTeX, EndNote)
    32. Investigating maize yield-related genes in multiple omics interaction network data. IEEE Transactions on NanoBioscience. 2020, 19(1): 142-151 (SCI, IF2017=2.158, PMID:31170079)

    33. An overview of SNP interactions in genome-wide association studies. Briefings in Functional Genomics. 2015, 14(2):143-155. (SCI, IF2017=3.783,PMID: 25241224)(BibTeX, EndNote)
    34. Similarity computation strategies in the microRNA-disease network: A Survey. Briefings in Functional Genomics. 2016, 15(1): 55-64. (SCI, IF2017=3.783,PMID: 26134276) most cited articles in this journal (BibTeX, EndNote)
    35. Research Progress in Protein Post-Translational Modification Site Prediction. Briefings in Functional Genomics. 2018, 18(4): 220-229. (SCI, IF2017=3.783, PMID: 30576418)
    36. Deep learning in omics: a survey and guideline. Briefings in Functional Genomics. 2019, 18(1): 41-57 (SCI, IF2017=3.783, PMID: 30265280)
    37. Prediction of tumor metastasis from sequencing data in the era of genome sequencing. Briefings in Functional Genomics. 2019, 18(6): 412-418 (SCI, IF2017=3.783, PMID: 31204784)
    38. Machine learning and its applications in plant molecular studies. Briefings in Functional Genomics. 2020, 19(1): 40-48
    39. Identifying Cell Types to Interpret scRNA-seq Data: How, Why, and More Possibilities. Briefings in Functional Genomics. Doi: 10.1093/bfgp/elaa003

    40. CPPred-RF: a sequence-based predictor for identifying cell-penetrating peptides and their uptake efficiency. Journal of Proteome Research.2017, 16(5):2044-2053. (SCI, IF2018=3.780)(web server)(入选ACS出版社庆祝中科院建院70周年Highlight文章)
    41. Local-DPP: An Improved DNA-binding Protein Prediction Method by Exploring Local Evolutionary Information. Information Sciences. 2017, 384:135-144. (SCI, IF2017=4.305)(web server)(BibTeX, EndNote)
    42. Prediction of human protein subcellular localization using deep learning. Journal of Parallel and Distributed Computing. 2018, 117: 212-217 (SCI, IF2017=1.815) most cited articles in this journal (BibTeX, EndNote)
    43. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework. Journal of Computational Biology. 2017, 24(12): 1230-1242 (SCI, IF2017=1.191, PMID: 29116822) (codes)(该软件被OMICTOOLS推荐)(BibTeX, EndNote)

    所获奖励：


  • 2019年 教育部自然科学奖二等奖(题目：microRNA结构与功能的智能预测方法，排名第2)
  • 科睿唯安（Clarivate Analytics）“全球高被引学者”(2018, 2019)
  • 2019年 Global Peer Review Awards (Top 1% in Biology and Biochemistry, Cross-Field) Powered by Publons
  • 四川省特聘专家
  • 2017年单年引用全球排名第40774名，其中生物信息学领域全球第184名，国内第5名(参考论文PLoS Biology 2019, 17(8): e3000384表S2)
  • 第二届中国计算机学会生物信息学会议最佳论文奖
  • 2016年 《生物信息学》优秀审稿专家
  • 2014年 CCDM数据挖掘竞赛第一名
  • 2013年 厦门大学第七届高等教育教学成果二等奖（题目: 公共计算机课程体系改革研究与实施, 排名第5）
  • 哈尔滨工业大学2009年优秀毕业生
  • 2009年 黑龙江省高校科学技术奖二等奖（题目: 计算分子生物学中的学习方法研究 证书号：2009-072-06）
  • 第三届中国数据挖掘会议（CCDM2009）大会优秀学生论文

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    学术软件


    培养学生：


  • 厦门大学
  • 天津大学
  • 电子科技大学

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    联系方式：

  • Email: zouquan(a)nclab.net(为防止垃圾邮件，请把(a)换成@)
  • QQ:(同事请加32400920) (学生请加1020628735)
  • 成都市成华区建设北路二段4号电子科技大学沙河校区翰海楼310，邮编：610054

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    最后修改时间：2020.2.26
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