I am a PhD student at Quan Zou's Lab, Chengdu, where I work on deep learning, bioinformatic, and computer vision, etc. Before that, I did my master at Northeast Forestry University.
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Papers:
PLOS Computational Biology 2022 (code&data)) Niu M, Zou Q, Lin C. CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach[J]. Plos Computational Biology, 2022, 18(1): e1009798-e1009798. (cite)
Bioinformatics 2022 (code&data) Mengting Niu, Quan Zou, Chunyu Wang, GMNN2CD: identification of circRNA–disease associations based on variational inference and graph Markov neural networks, Bioinformatics, 2022;, btac079, https://doi.org/10.1093/bioinformatics/btac079. (cite)
Briefings in Bioinformatics 2021 Niu M, Ju Y, Lin C, et al. Characterizing viral circRNAs and their application in identifying circRNAs in viruses[J]. Briefings in Bioinformatics, 2022, 23(1): bbab404. (cite)
IEEE Journal of Biomedical and Health Informatics(data and codes) Niu M, Wu J, Zou Q, et al. rBPDL: Predicting RNA-Binding Proteins Using Deep Learning[J]. IEEE journal of biomedical and health informatics, 2021, 25(9): 3668-3676. (cite)
Plant molecular biology 2021 (data and code ) Niu M, Lin Y, Zou Q. sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks[J]. Plant molecular biology, 2021, 105(4-5): 483-495. (cite)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2021 (web)and dataset) Niu, M., & Zou, Q. (2021). SgRNA-RF: identification of SgRNA on-target activity with imbalanced datasets. IEEE/ACM Transactions on Computational Biology and Bioinformatics. (cite)
Computational and structural biotechnology journal 2020 (web) and dataset) Niu M, Zhang J, Li Y, et al. CirRNAPL: a web server for the identification of circRNA based on extreme learning machine[J]. Computational and structural biotechnology journal, 2020, 18: 834-842. (cite)
Journal of proteome research 2019 (web)and dataset) Li Y, Niu M, Zou Q. ELM-MHC: an improved MHC identification method with extreme learning machine algorithm[J]. Journal of proteome research, 2019, 18(3): 1392-1401. (cite)
Recent ProjectsThe main project involved is the related research of circular RNA. Currently, I am leading the GMNN and MSRN project, which aims to develop a series of deep learning models to solve computational problems of circRNA. ![]() ![]() The Natural Science Foundation of China (No.62131004,62172076) Awards
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