I am a postdoctoral fellow at Quan Zou's Lab,the University of Electronic Science and Technology of China,Chengdu, where I work on deep learning, bioinformatic, and computer vision, etc.
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Papers:Bioinformatics(under review) BMC Biology 2024 (code&data)) Mengting Niu, Chunyu Wang, Yaojia Chen, Quan Zou, Ren Qi, Lei Xu. CircRNA identification and feature interpretability analysis[J]. BMC Biology, 2024, 22(1):44. Doi: 10.1186/s12915-023-01804-x. (cite)
BMC Biology 2024 (code&data)) Mengting Niu, Chunyu Wang, Zhanguo Zhang, Quan Zou. A computational model of circRNA-associated diseases based on a graph neural network: prediction and case studies for follow-up experimental validation[J]. BMC Biology, 2024, 22(1): 24. Doi.org/10.1186/s12915-024-01826-z. (cite)
Briefings in Bioinformatics 2024 Mengting Niu, Chunyu Wang, Yaojia Chen, Quan Zou, Lei Xu. Identification, characterization and expression analysis of circRNA encoded by SARS-CoV-1 and SARS-CoV-2[J]. Briefings in Bioinformatics, 2024, 25(2): bbad537. (cite)
IEEE/ACM Transactions on Computational Biology and Bioinformatics(under review)
Front. Comput. Sci. Mengting Niu,Yaojia Chen, Chunyu Wang, , Quan Zou, Lei Xu. Computational approaches for circRNA-disease association prediction: a review.Frontiers of Computer Science,2025, 19(4): 194904.
PLOS Computational Biology 2022 (code&data)) Mengting Niu, Quan Zou, Chen Lin. CRBPDL: identification of circRNA-RBP interaction sites using an ensemble neural network approach[J]. PLoS Computational Biology, 2022, 18(1): e1009798-e1009798. (cite)
Bioinformatics 2022 (code&data) Mengting Niu, Quan Zou, Chunyu Wang, GMNN2CD: identification of circRNA¨Cdisease associations based on variational inference and graph markov neural networks[J]. Bioinformatics, 2022, 38(8): 2246-2253.(cite)
Briefings in Bioinformatics 2021 Mengting Ni, Ying Ju, Chen Lin, Quan Zou. Characterizing viral circRNAs and their application in identifying circRNAs in viruses[J]. Briefings in Bioinformatics, 2022, 23(1): bbab404. (cite)
IEEE Journal of Biomedical and Health Informatics(data and codes) Mengting Niu, Jin Wu#, Quan Zou, Zhendong Liu, Lei Xu. rBPDL: predicting RNA-binding proteins using deep learning[J]. IEEE Journal of Biomedical and Health Informatics, 2021, 25(9): 3668-3676. (cite)
Plant molecular biology 2021 (data and code ) Mengting Niu, Yuan Lin, Quan Zou. sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks[J]. Plant Molecular Biology, 2021, 105(4-5): 483-495. (cite)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2021 (web)and dataset) Mengting Niu, Quan Zou. SgRNA-RF: identification of SgRNA on-target activity with imbalanced datasets[J]. IEEE-ACM Transactions on Computational Biology and Bioinformatics, 2021, 19(4): 2442-2453. (cite)
Computational and structural biotechnology journal 2020 (web) and dataset) Niu M, Zhang J, Li Y, et al. CirRNAPL: a web server for the identification of circRNA based on extreme learning machine[J]. Computational and structural biotechnology journal, 2020, 18: 834-842. (cite)
International Conference on Intelligent Computing 2022 Niu M, Hesham A E L, Zou Q. GATSDCD: Prediction of circRNA-Disease Associations Based on Singular Value Decomposition and Graph Attention Network[C]//International Conference on Intelligent Computing. Springer, Cham, 2022: 14-27.(cite)
Journal of proteome research 2019 (web)and dataset) Li Y, Niu M, Zou Q. ELM-MHC: an improved MHC identification method with extreme learning machine algorithm[J]. Journal of proteome research, 2019, 18(3): 1392-1401. (cite)
Recent ProjectsThe main project involved is the related research of circular RNA. Currently, I am leading the GMNN and MSRN project, which aims to develop a series of deep learning models to solve computational problems of circRNA. ![]() ![]() Host.The Natural Science Foundation of China (No.62473268) Host.The Natural Science Foundation of China (No.62303328) Host.The National funded postdoctoral researcher program of China (GZC20230382) Participate: The Natural Science Foundation of China (No.62131004,62172076) Awards
Welcome/Last revision date:2024.3.22
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