Publications

• Chao Wang, et al. 2024. MFPSP: Identification of fungal species-specific phosphorylation site using offspring competition-based genetic algorithm. PLOS Computational Biology, (Accepted)
• Chao Wang, et al. 2023. ScerePhoSite: An interpretable method for identifying fungal phosphorylation sites in proteins using sequence-based features. Computers in Biology and Medicine, (DOI: 10.1016/j.compbiomed.2023.106798)
• Chao Wang, et al. 2023. Prediction of protein solubility based on sequence physicochemical patterns and distributed representation information with DeepSoluE. BMC Biology, 21(12): (DOI: 10.1186/s12915-023-01510-8)
• Chao Wang, et al. 2022. Enhancer-FRL: Improved and robust identification of enhancers and their activities using feature representation learning. IEEE/ACM Transactions on Computational Biology and Bioinformatics (DOI: 10.1109/TCBB.2022.3204365).
• Chao Wang, et al. 2022. DeepAc4C: A convolutional neural network model with hybrid features composed of physico-chemical patterns and distributed representation information for identification of N4‑acetylcytidine in mRNA. Bioinformatics, 38(1): 52-57.
• Chao Wang, et al. 2021. A machine learning method for differentiating and predicting human-infective coronavirus based on physicochemical features and composition of the spike protein. Chinese Journal of Electronics, 30(5): 815-823.
• Chao Wang, et al. 2020. NonClasGP-Pred: Robust and efficient prediction of non-classically secreted proteins by integrating subset-specific optimal models of imbalanced data. Microbial Genomics, 6(12): mgen000483.
• Chao Wang, et al. 2020. FunEffector-Pred: Identification of fungi effector by activate learning and genetic algorithm sampling of imbalanced data. IEEE Access, 8: 57674-57683.
• Chao Wang, et al. 2020. Its2vec: Fungal species identification using sequence embedding and random forest classification. BioMed Research International, 2020: 2468789
• Chao Wang, Wenying-Zhuang. 2020. Carbon metabolic profiling of Trichoderma strains provides insight into potential ecological niches. Mycologia, 112(2): 213-223.
• Chao Wang, Wenying-Zhuang. 2019. Evaluating effective Trichoderma isolates for biocontrol of Rhizoctonia solani causing root rot of Vigna unguiculata. Journal of Integrative Agriculture, 18(9): 2072-2079.
• Chao Wang, Wenying-Zhuang. 2021. Comparative molecular evolution of chitinases underscores mycoparasitism life style of Ascomycota. Microbial Genomics, 7(9): 000646.
• Chao Wang, et al. 2016. Extracellular proteome profiling of Bacillus pumilus SCU11 producing alkaline protease for dehairing. Journal of Microbiology and Biotechnology, 26(11): 1993-2005.
• 王超, et al. 2017. 短小芽孢杆菌遗传操作系统的建立及应用. 四川大学学报 (自然科学版), 5: 033.