发表论文（Publications）

代表性论文

• Xi Chen, ..., Mingli Li*, Chao Wang*, Zengnan Mo*. Dysbiosis of SCFA-producing gut microbiota and metabolomic perturbations in calcium oxalate kidney stones. Microbiome. 2025. Accepted. (co-corresponding)
• Jin Yang, ..., Yongqing Zhang*, Chao Wang*. FunBert: a deep learning method for BERT-based multi-species recognition of fungi. Current Bioinformatics. 2025. Accepted.
• Chao Wang, et al., MFPSP: Identification of fungal species-specific phosphorylation site using offspring competition-based genetic algorithm. PLOS Computational Biology. 2024.20(11):e1012607
• Chao Wang, et al., ScerePhoSite: An interpretable method for identifying fungal phosphorylation sites in proteins using sequence-based features. Computers in Biology and Medicine. 2023.158:106798
• Chao Wang, et al., Prediction of protein solubility based on sequence physicochemical patterns and distributed representation information with DeepSoluE. BMC Biology. 2023.21(1):12
• Chao Wang, et al., Enhancer-FRL: Improved and robust identification of enhancers and their activities using feature representation learning. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2022.20(2):967-975.
• Chao Wang, et al., DeepAc4C: A convolutional neural network model with hybrid features composed of physico-chemical patterns and distributed representation information for identification of N4‑acetylcytidine in mRNA. Bioinformatics. 2022.38(1): 52-57.
• Chao Wang, Wenying-Zhuang. Comparative molecular evolution of chitinases underscores mycoparasitism life style of Ascomycota. Microbial Genomics. 2021.7(9): 000646.

其他论文

• Fuxiang Fang, ..., Shengzhu Huang*, Chao Wang*, Zengnan Mo*. Effects of plasma aldosterone and renin concentrations with blood pressure variation and hypertension risk in chinese adults: a population-based Hakka biobank study. Endocrine Practice. 2025.doi:10.1016/j.eprac.2025.06.015. (co-corresponding)
• Chao Wang, et al., A machine learning method for differentiating and predicting human-infective coronavirus based on physicochemical features and composition of the spike protein. Chinese Journal of Electronics. 2021.30(5): 815-823.
• Chao Wang, et al., NonClasGP-Pred: Robust and efficient prediction of non-classically secreted proteins by integrating subset-specific optimal models of imbalanced data. Microbial Genomics. 2020.6(12):e000483.
• Chao Wang, et al., FunEffector-Pred: Identification of fungi effector by activate learning and genetic algorithm sampling of imbalanced data. IEEE Access. 2020.8: 57674-57683.
• Chao Wang, et al., Its2vec: Fungal species identification using sequence embedding and random forest classification. BioMed Research International, 2020: 2468789
• Chao Wang, Wenying-Zhuang. Carbon metabolic profiling of Trichoderma strains provides insight into potential ecological niches. Mycologia. 2020.112(2): 213-223.
• Chao Wang, Wenying-Zhuang. Evaluating effective Trichoderma isolates for biocontrol of Rhizoctonia solani causing root rot of Vigna unguiculata. Journal of Integrative Agriculture.2019.18(9): 2072-2079.
• Chao Wang, et al., Extracellular proteome profiling of Bacillus pumilus SCU11 producing alkaline protease for dehairing. Journal of Microbiology and Biotechnology. 2016.26(11): 1993-2005.
• 王超, et al., 短小芽孢杆菌遗传操作系统的建立及应用. 四川大学学报 (自然科学版). 2017.5:033.