Chunyan Ao

Research

Ø Biological sequence modification

• • Machine learning
• • RNA modification prediction
• • classification of unbalanced data

Ø Publications

1. 1. Chunyan Ao, Mengting Niu, Quan Zou, Liang Yu, Yansu Wang; YModPred: an interpretable prediction method for multi-type RNA modification sites in S. cerevisiae based on deep learning. BMC Biology. 2025, 23(1): 272. [code&data]


2. 2. Chunyan Ao, Xiucai Ye, Tetsuya Sakurai, Quan Zou, Liang Yu; m5U-SVM: identification of RNA 5-methyluridine modification sites based on multi-view features of physicochemical features and distributed representation. BMC Biology. 2023, 21(1): 93. [Web server]


3. 3. Chunyan Ao, Shihu Jiao, Yansu Wang, Liang Yu, Quan Zou; Biological sequence classification: a review on data and general methods. Research. 2022, 2022: 0011. [data]


4. 4. Chunyan Ao, Quan Zou, Liang Yu; NmRF: identification of multispecies RNA 2'-O-methylation modification sites from RNA sequences. Briefings in Bioinformatics. 2022, 23(1): bbab480. [Web server] and [data]


5. 5. Chunyan Ao, Quan Zou, Liang Yu; RFhy-m2G: Identification of RNA N2-methylguanosine modification sites based on random forest and hybrid features. Methods. 2021, DOI: 10.1016/j.ymeth.2021.05.016. [data]


6. 6. Chunyan Ao, Liang Yu, Quan Zou; Prediction of bio-sequence modifications and the associations with diseases. Briefings in Functional Genomics. 2021, 20(1): 1-18. [data] Editor's Choice Highly Cited Articles from Briefings in Functional Genomics


7. 7. Chunyan Ao, Yu Zhang, Dapeng Li, Yuming Zhao, Quan Zou; Progress in the Development of Antimicrobial Peptide Prediction Tools. Current Protein and Peptide Science. 2021, 22(3): 211-216.


8. 8. Chunyan Ao, Wenyang Zhou, Lin Gao, Benzhi Dong, Liang Yu; Prediction of antioxidant proteins using hybrid feature representation method and random forest. Genomics. 2020, 112 (6): 4666-4674. [data]


9. 9. Chunyan Ao, Shunshan Jin, Hui Ding, Quan Zou, Liang Yu; Application and Development of Artificial Intelligence and Intelligent Disease Diagnosis. Current Pharmaceutical Design. 2020, 26 (26): 3069-3075.


10. 10. Chunyan Ao, Shunshan Jin, Yuan Lin, Quan Zou; Review of Progress in Predicting Protein Methylation Sites. Current Organic Chemistry. 2019, 23(15): 1663-1670.