发表论文HAlign1. HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy. Bioinformatics. 2015 (soft) 2. HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing. Algorithms for Molecular Biology. 2017 (soft) 3. HAlign-III: fast multiple alignment of ultra-large numbers of similar DNA/RNA sequences. Molecular Biology and Evolution. 2022 (soft) MSA1. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment. BMC Bioinformatics. 2017 (soft) 2. Reconstructing evolutionary trees in parallel for massive sequences. BMC Systems Biology. 2017 3. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework. Journal of Computational Biology. 2017 (soft) 4. VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism. Journal of Genetics and Genomics. 2018 (soft) 5. FMAlign: A novel fast multiple nucleotide sequence alignment method based on FM-index. Briefings in Bioinformatics. 2021 6. Improved Center Star Alignment Algorithm Based on Profile Alignment. Journal of University of Electronic Science and Technology of China. 2022 7. WMSA: a novel method for multiple sequence alignment of DNA sequences. Bioinformatics. 2022 (soft) 8. WMSA2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies. Briefings in Bioinformatics. 2023 (soft) 9. FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets. Bioinformatics. 2024 (soft) MSA post-processing1. TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments. PLOS COMPUTATIONAL BIOLOGY. 2024 (soft) 2. ReAlign-N: an integrated realignment approach for multiple nucleic acid sequence alignment, combining global and local realignments. NAR Genomics and Bioinformatics. 2024 (soft) Review1. Developments in Algorithms for Sequence Alignment: A Review. Biomolecules. 2022 2. A survey on the algorithm and development of multiple sequence alignment. Briefings in Bioinformatics. 2022 |